Euramoo Software

Euramoo Software

 

Bioinformatics

Biolinux 8 is available as separate node type. Standard compute nodes contain the following packages:

 

AbySS

ALLPATHS-LG

AMOS

BamTools

bam2fastq

BayesTraits

BEDTools

BitSeq

BioPerl

Biopython

Bowtie2

BLAST

BLAST+

BLAT

BWA

CAP3

CD-HIT

Clustral-Omega

ClustralW2

cutadapt

 

EMBOSS

Exonerate

eXpress

FASTA

fastqc

GATK

GMAP-GSNAP

HMMER

HTSeq

Jellyfish

MAFFT

MMSEQ

MODELLER

Mothur

mpiBLAST

MrBayes

MUMmer

MUSCLE

NCBI-Toolkit

Oases

PAML

PANDAseq

PeakSeq

PhyML

picard

PRANK

RAxML

rSeq

RSEQtools

R-bundle-Bioconductor

SAMtools

snpEff

SOAPdenovo

tabix

Trinity

Velvet

 

 

Chemistry

GROMACS

ORCA

 

Compilers

GCC

NASM

 

Data Mining

HDF

HDF5

Szip

 

Development Tools

Ant

Autoconf

Cmake

EMACS

gperftools

git

inputproto

Junit

kbproto

Mercurial

Nano

 

Documentation and Text Tools

bibtexparser

Bison

Flex

Freetype

Gettext

Ghostscript

libgtexutils

libharu

 

Languages

Java

Matlab 2015b (licensed for UQ users)

Matlab MCR

Perl

Python

 

Maths / Statistics

ParMETIS

R

 

Software Libraries

argtable

Armadillo

ATLAS

BLACS

Boost

cURL

expat

FFTW

FLTK

GLib

GLPK

GMP

GSL

JarPer

libffi

libjpeg-turbo

libpciaccess

libpng

libreadline

libTIFF

libtool

libunwind

libX11

libxcb

libxml2

LAPACK

hwlock

matplotlib

MPICH

ncurses

numactl

numpy

OpenBLAS

OpenMPI

protobuf

Qt

ScaLAPACK

scipy

SQLite

Tcl

TK

xcb-proto

xextproto

xtrans

zlib

 

 

 

Utilities

bzip2

gzip

M4

 

 

About QRIScloud

QRIScloud is a large-scale cloud computing and data storage service.  It is aimed at stimulating and accelerating research use of computing across all disciplines. 

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QRIScloud @
QCIF Ltd
Axon building, 47
The University of Queensland
St Lucia, Qld, 4072

Contact us through the QRIScloud support desk, or email support@qriscloud.org.au

 

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